YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77628006, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.53
Transmembrane Helix	10	32	0.74
Cytoplasmic	33	142	0.68
Transmembrane Helix	143	163	0.81
Non-Cytoplasmic	164	199	0.69
Transmembrane Helix	200	219	0.79
Cytoplasmic	220	234	0.76
Transmembrane Helix	235	259	0.87
Non-Cytoplasmic	260	331	0.79
Transmembrane Helix	332	354	0.89
Cytoplasmic	355	360	0.79
Transmembrane Helix	361	381	0.90
Non-Cytoplasmic	382	426	0.67
Transmembrane Helix	427	449	0.79
Cytoplasmic	450	460	0.77
Transmembrane Helix	461	480	0.85
Non-Cytoplasmic	481	488	0.69
Transmembrane Helix	489	508	0.91
Cytoplasmic	509	526	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFGLAAGS GHWFSALALG VTLLKCLLIP TYHSTDFEVH RNWLAITHNL PISQWYYEAT  60
   61 SEWTLDYPPF FAWFEYALSH IAKYFDQEML DIHNLNYYSS RTLLFQRFSV ILTDALFVYA 120
  121 VHECCKCIDG KRTGKDPTEK PKFVLSVLLL WNFGLLIVDH IHFQYNGLLS GLLLLSIARL 180
  181 FQKRHIEGAF LFAVLLHFKH IYLYVAPAYG IYLLRSYCFT ASKPDGSVRW DSFSIVRVTA 240
  241 LALIVFLVSA LSLGPFLALN QLPQVFSRLF PFKRGLCHAY WAPNFWALYS ALDKALCVTG 300
  301 LELKLLDPSQ IPRASMTSGL VQQSQHTVLP SVSPSATLIC TLIAILPSVF CLWFKPQGPR 360
  361 GFLRCLVLCA LSSFMFGWHV HEKAILLAIL PMSLLAVEKA GDATIFLILT TTGHYSLFPL 420
  421 LFTAPELPIK ILLMSLFTVY SISSLRTLFR KEKPLFNWME TLYLLGLGPL EVCCEFLFPF 480
  481 TSWKLKYPFI PLLLTSVYCA VGITYAWIRL YASVLTGCLV SKTKKH