YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG6_RAT
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.43
Transmembrane Helix	7	23	0.46
Non-Cytoplasmic	24	113	0.78
Transmembrane Helix	114	135	0.81
Cytoplasmic	136	143	0.89
Transmembrane Helix	144	164	0.92
Non-Cytoplasmic	165	172	0.81
Transmembrane Helix	173	197	0.81
Cytoplasmic	198	228	0.72
Transmembrane Helix	229	250	0.93
Non-Cytoplasmic	251	294	0.68
Transmembrane Helix	295	316	0.88
Cytoplasmic	317	323	0.57
Transmembrane Helix	324	343	0.86
Non-Cytoplasmic	344	349	0.49
Transmembrane Helix	350	372	0.84
Cytoplasmic	373	385	0.44
Transmembrane Helix	386	408	0.87
Non-Cytoplasmic	409	437	0.50
Transmembrane Helix	438	460	0.88
Cytoplasmic	461	468	0.47
Transmembrane Helix	469	492	0.90
Non-Cytoplasmic	493	507	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESWTWMTVV VLLGLTVRWT VSLNSYSGAG KPPMFGDYEA QRHWQEITLN LPVKQWYFNS  60
   61 SDNNLQYWGL DYPPLTAYHS LLCAYVAKFI NPDWVALHTS RGYESQAHKL FMRTTVLAAD 120
  121 LLIYIPAVLL YCYSLKEISP KRKIASALCI LLYPGLILID YGHFQYNSVS LGFALWGVLG 180
  181 VSCDWDLLGS LAFCLALNYK QMELYHSLPF FCFLLGKCFK KGLRGKGSAL FIRIACTVVA 240
  241 SFLLCWLPFL TEREHALQVV RRLFPVDRGL FEDKVANIWC SLNVFLKIKD ILPRHIQIAI 300
  301 SFCFTFLSLL PACIKLTVQP SAKGFRFTLV SCALSFFLFS FQVHEKSILL VSLPVCLVLT 360
  361 EIPFMSTWFL LVSTFSMLPL LLKDQLLLPS VVTVMAFLIA CSTFFPMFEN TSEEQLQLKS 420
  421 FAVSVRRHLP GFTFLPRIIQ CLFLSSVITM ILLTILSVTL DPPQKLPDLF SVLICFVSCV 480
  481 NFVFFLVYFN IVIMWDSKNG RNRKKID