YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83415148, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCYNNETVV FFYSISHKNI SDTWGTKAKA VVGMGLLVSV FVIFTNILVM AAIFMNRRFH  60
   61 YPIYYLLGNL AAADLFAGTS YMYLMFHTGP WTAKLTTYQW FVRQGLIDTS LTASVFNLMA 120
  121 IALERHQTIF TMQLHSKMTN HRVVLLILGI WTVAIIMGLV PAMGWNCMCD IGNCSTMAPL 180
  181 YSRSYLVFWA AINLLTFTVM VAVYTRIFIY VRRKSQRMSQ HTSQVKHKET VVNLMKTVVM 240
  241 ILGCFVVCWT PGMVLLLLDG LCRSCDVLTY EKFFLVLAES NSLMNPIIYS YRDKDMRDTF 300
  301 KRILCLCCRS KQSEEHSGVR FNTLEQERRR RVQQESYLAR RARDAGAQQE NGGRLVLQEN 360
  361 KEMLESSDS

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.91
Transmembrane Helix	31	54	0.90
Cytoplasmic	55	62	0.81
Transmembrane Helix	63	85	0.90
Non-Cytoplasmic	86	103	0.84
Transmembrane Helix	104	123	0.89
Cytoplasmic	124	142	0.92
Transmembrane Helix	143	165	0.90
Non-Cytoplasmic	166	185	0.96
Transmembrane Helix	186	210	0.92
Cytoplasmic	211	231	0.97
Transmembrane Helix	232	255	0.80
Non-Cytoplasmic	256	369	0.78