YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58865364, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.66
Transmembrane Helix	9	27	0.45
Non-Cytoplasmic	28	35	0.54
Transmembrane Helix	36	59	0.80
Cytoplasmic	60	67	0.58
Transmembrane Helix	68	88	0.91
Non-Cytoplasmic	89	95	0.47
Transmembrane Helix	96	114	0.63
Cytoplasmic	115	115	0.33
Transmembrane Helix	116	140	0.65
Non-Cytoplasmic	141	144	0.42
Transmembrane Helix	145	168	0.78
Cytoplasmic	169	174	0.48
Transmembrane Helix	175	195	0.76
Non-Cytoplasmic	196	231	0.69
Transmembrane Helix	232	251	0.93
Cytoplasmic	252	281	0.69
Transmembrane Helix	282	300	0.62
Non-Cytoplasmic	301	305	0.40
Transmembrane Helix	306	321	0.38
Cytoplasmic	322	322	0.20
Transmembrane Helix	323	340	0.57
Non-Cytoplasmic	341	347	0.44
Transmembrane Helix	348	367	0.81
Cytoplasmic	368	382	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAGLARTL STAAGASLHL DGGLLPLPSR GGHHLLGHSQ GGIYPAGFLY IFTGLYYATD  60
   61 RGTDIPTAQN IFAVLYLVTL VLVFLIYHQT SKVPPFVFFF MCCASYRVHS IFVLRLFNDP 120
  121 VAMALLFLSV NLFLAQRWSW GCCCFSLAVS VKMNVLLFAP GLLFLLLTQF GFRGALPKLA 180
  181 LCAALQVVLG LPFLLENPVG YLSRSFDLGR QFLYQWTVNW RLLPEAIFLH RAFHLALLAA 240
  241 HLSFLLLFAL CRWHRTGESI LSLLKDPSKR KVPPQPLTPN QIVSVLFTSN FIGVCFSRSL 300
  301 HSQFYVWYFH TLPHLLWATP ARWLTHLLRL LVLGLIELSW NTYPSTPFSS AALHLCHAVT 360
  361 LLQLWLSPQF FPRSVQPSRK TH