YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82659771
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTENGTCID SVNVEQNGGP AISALMFAAG AIGNVLALVL LEFRRRKEKN RQRQSLFHLL  60
   61 VTTLVITDLT GTCLTSPVVQ TAYLTNTTLV GMSKTHAVCE YFGFAMTFLS LATLSILLAM 120
  121 ALERCISIGY PYHYGRHITK RCGYITIPCI YLACFLFCLM PFAGFGKYVQ YCPGTWCFIA 180
  181 MNSEEIEDRA YANVYATVML FIMIIIVVCN CFVVYHLVLM YRRRKMNRGS VQTRSKRNRR 240
  241 YFSWAEEVEH LILLVFMTVI FVICFLPLII RVYINSMGNP GKNRKTDLIA LRFLSVNPIF 300
  301 DPLVFIILSP SVLRFLWGAL CKTTFMSSRN SLFKTSISKN PAGQIELYQP SSNSVETTQL 360
  361 SKSVQMIC

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.95
Cytoplasmic	42	55	0.92
Transmembrane Helix	56	79	0.89
Non-Cytoplasmic	80	100	0.89
Transmembrane Helix	101	122	0.91
Cytoplasmic	123	141	0.92
Transmembrane Helix	142	165	0.92
Non-Cytoplasmic	166	197	0.94
Transmembrane Helix	198	219	0.95
Cytoplasmic	220	249	0.96
Transmembrane Helix	250	270	0.96
Non-Cytoplasmic	271	298	0.92
Transmembrane Helix	299	321	0.83
Cytoplasmic	322	368	0.97