YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC4AA_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	119	0.96
Transmembrane Helix	120	143	0.88
Non-Cytoplasmic	144	187	0.88
Transmembrane Helix	188	208	0.80
Cytoplasmic	209	218	0.76
Transmembrane Helix	219	238	0.86
Non-Cytoplasmic	239	245	0.76
Transmembrane Helix	246	267	0.93
Cytoplasmic	268	389	0.87
Transmembrane Helix	390	414	0.87
Non-Cytoplasmic	415	577	0.70
Transmembrane Helix	578	601	0.80
Cytoplasmic	602	612	0.69
Transmembrane Helix	613	635	0.79
Non-Cytoplasmic	636	651	0.78
Transmembrane Helix	652	672	0.88
Cytoplasmic	673	695	0.80
Transmembrane Helix	696	720	0.89
Non-Cytoplasmic	721	750	0.87
Transmembrane Helix	751	770	0.76
Cytoplasmic	771	781	0.69
Transmembrane Helix	782	805	0.90
Non-Cytoplasmic	806	997	0.89
Transmembrane Helix	998	1016	0.85
Cytoplasmic	1017	1036	0.80
Transmembrane Helix	1037	1053	0.90
Non-Cytoplasmic	1054	1067	0.71
Transmembrane Helix	1068	1091	0.79
Cytoplasmic	1092	1113	0.85
Transmembrane Helix	1114	1140	0.88
Non-Cytoplasmic	1141	1236	0.65
Transmembrane Helix	1237	1261	0.87
Cytoplasmic	1262	1318	0.47
Transmembrane Helix	1319	1338	0.88
Non-Cytoplasmic	1339	1348	0.41
Transmembrane Helix	1349	1373	0.83
Cytoplasmic	1374	1378	0.40
Transmembrane Helix	1379	1403	0.80
Non-Cytoplasmic	1404	1437	0.37
Transmembrane Helix	1438	1472	0.73
Cytoplasmic	1473	1481	0.68
Transmembrane Helix	1482	1504	0.62
Non-Cytoplasmic	1505	1539	0.53
Transmembrane Helix	1540	1563	0.88
Cytoplasmic	1564	1829	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLLPPTGT SVFRRFTPES LVEIERLIQE KSTREELEGA EEEPQAPSSD LEAGKCLPMI  60
   61 YGDPPGDLLN TPLEDIDPFY KTQKTFIVIS KGNTIFRFSS EPAMFCISPF SIVRRGAIKI 120
  121 LIHSLFSMFI MITILSNCVF MTMSNPPAWS KTVEYVFTGI YTFEATVKVL SRGFCIGPFT 180
  181 FLRDPWNWLD FMVISMAYVT EFVDLGNVSA LRTFRVLRAL KTITVIPGLK TIVGALIQSV 240
  241 KKMIDVMILT IFALAVFALI GLQLFMGNLR QKCIRWPILN STIFDVYNSN MVNDTTLNVT 300
  301 DTFDFKAYIN NEENQYFLEG SLDALLCGNS SDAGRCPEGY TCMKAGRNPN YGYTSYDNFG 360
  361 WAFLALFRLM TQDFWENLFQ LTLRAAGKTY MIFFVVVIFL GSFYLINLIL AVVAMAYDEQ 420
  421 NEATLAEARD KEEEFQRLLE QLKNQETGSK ASLASQKTQS RGSNRTGSLH DLADEDVIKD 480
  481 CNGRIVPRLI VNRVSSNKEL SAEEDQKSLS SKHSMQYLDQ PKLSKRTASA LSVLTATMEG 540
  541 LEDAQRPCPP GWYKFADMFL KWDCCAPWIL FKKWVHFVVM DPFVDLGITI CIVLNTLFMA 600
  601 MEHYPMSPHF EHVLSVGNLV FTGIFTAEMV FKLIAMDPYY YFQVGWNIFD SIIVTLSLVE 660
  661 LGLANVQGLS VLRSFRLLRV FKLAKSWPTL NMLIKIIGNS VGALGNLTLV LAIIVFIFAV 720
  721 VGMQLFGKSY KDCVCKISED CELPRWHMND FFHSFLIVFR ILCGEWIETM WDCMEVAGAS 780
  781 MCLIVFMMVM VIGNLVVLNL FLALLLSSFS GDNLSGGDDD GEMNNLQIAI GRITRGIDWV 840
  841 KALVASMVQR ILGKKPDNTK EEGEGDIELY ALNHLDEGKM ADGLTNCLSP TLTVPIARCE 900
  901 SDVEEDEDSE SSDEEDAKAT LNDGDSSVCS TVDYQPPEPE PEPEEVEEEE PEPEEPEACF 960
  961 TEGCIRRCAC LSVDITEGWG KKWWNLRRTC FTIVEHDYFE TFIIFMILLS SGALAFEDIN1020
 1021 IERRRVIKTI LEYADKVFTY IFIVEMLLKW VAYGFKTYFT NAWCWLDFLI VDVSLVSLTA1080
 1081 NLMGYSELGA IKSLRTLRAL RPLRALSRFE GMRVVVNALV GAIPSIFNVL LVCLIFWLIF1140
 1141 SIMGVNLFAG KFYHCINTTT EERIPMDVVN NKSDCMALMY TNEVRWVNVK VNYDNVGLGY1200
 1201 LSLLQIATFK GWMDIMYAAV DSREVDEQPS YEINLYMYLY FVIFIIFGSF FTLNLFIGVI1260
 1261 IDNFNQQKSK FGGKDIFMTE EQKKYYNAMK KLGAKKRPKP IPRPSNIIQG LVFDFISKQF1320
 1321 FDIFIMVLIC LNMVTMMIET DDQSAEKEYV LYQINLVFIV VFTSECVLKL FALRQYFFTI1380
 1381 GWNVFDFVVV ILSIAGLMLS DIIEKYFVSP TLFRVIRLAR IGRVLRLIRG AKGIRTLLFA1440
 1441 LMMSLPALFN IGLLLFLIMF IFSIFGMSNF AYVKKQAGID DIFNFETFGG SIICLFEITT1500
 1501 SAGWDGLLLP ILNSGPPDCD PDFENPGTDV RGNCGNPGMG IMFFCSYIIM SFLVVVNMYI1560
 1561 AIILENFNNA QEESGDPLCE DDFDMFDETW EKFDVDATQF IEYDRLFDFV DALQEPLRIA1620
 1621 KPNRLKLISM DIPIVNGDKI HSQDILLAVT REVLGDTIEM DAMKESIEAK FIMNNPTSAS1680
 1681 FEPIITTLRR KEEERAAIAV QRIYRRHLLK RAIRYACFMR RSKRKVRNPN DNEPPETEGL1740
 1741 IARKMNTLYG SNPELAMALE LETRPMRPNS QPPKPSQVTQ TRASVTFPRP QGQLILPVEL1800
 1801 TSEVILRSAP ITHSLNSSEN ATTIKESIV