YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84993374
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIAAVITFLI LFTIFGNALV ILAVLTSRSL RAPQNLFLVS LAAADILVAT LIIPFSLANE  60
   61 LLGYWYFRRT WCEVYLALDV LFCTSSIVHL CAISLDRYWA VSRALEYNSK RTPRRIKCII 120
  121 LTVWLIAAVI SLPPLIYKGD QGPQPRGRPQ CKLNQEAWYI LASSIGSFFA PCLIMILVYL 180
  181 RIYLIAKRSH RRGPRATGRP GEGESKQPRP VPTGASTKVP TLASLAASGE ANGHSKPTRE 240
  241 KEEGDTPEDP GTPALPPSWS ALPNSGQGQK EGACGASPEE GVEEEEEEEE EEEGEPQALP 300
  301 ASPASACSPP LRQPQGSRVL ATLRGQVLLG RGVGTSSGQW WRRRAQLTRE KRFTFVLAVV 360
  361 IGVFVLCWFP FFFSYSLGAI CPQHCKVPHG LF

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.95
Cytoplasmic	27	35	0.86
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	74	0.93
Transmembrane Helix	75	95	0.93
Cytoplasmic	96	115	0.88
Transmembrane Helix	116	137	0.91
Non-Cytoplasmic	138	161	0.91
Transmembrane Helix	162	185	0.88
Cytoplasmic	186	352	0.99
Transmembrane Helix	353	372	0.98
Non-Cytoplasmic	373	392	0.92