YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84993360
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAAVITFLIL FTIFGNALVI LAVLTSRSLR APQNLFLVSL AAADILVATL IIPFSLANEL  60
   61 LGYWYFRRTW CEVYLALDVL FCTSSIVHLC AISLDRYWAV SRALEYNSKR TPRRIKCIIL 120
  121 TVWLIAAVIS LPPLIYKGDQ GPQPRGRPQC KLNQEAWYIL ASSIGSFFAP CLIMILVYLR 180
  181 IYLIAKRSHR RGPRAKGRPG EGESKQPRPV PTGASTKVPT LVSLAASGEA NGHSKPTGEK 240
  241 EEGDTPEDPG TPALPPSWSA LPNSGQGQKE GACGASPEEG VEEEEEEEEE EGEPQALPAS 300
  301 PASACSPPLR QPQGSRVLAT LRGQVLLGRG VGTSSGQWWR RRAQLTREKR FTFVLAVVIG 360
  361 VFVLCWFPFF FSYSLGAICP QHCKVPHG

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.94
Transmembrane Helix	5	25	0.93
Cytoplasmic	26	34	0.84
Transmembrane Helix	35	57	0.92
Non-Cytoplasmic	58	73	0.92
Transmembrane Helix	74	94	0.93
Cytoplasmic	95	114	0.88
Transmembrane Helix	115	136	0.91
Non-Cytoplasmic	137	160	0.92
Transmembrane Helix	161	184	0.88
Cytoplasmic	185	350	0.99
Transmembrane Helix	351	370	0.98
Non-Cytoplasmic	371	388	0.92