YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33331364
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLHYTFDQ LELYLEWAFA QHGEATPIPS IQPYPGVFVG DLSQLNRFKR HAFSAVVGTL  60
   61 FVLAFCGNLS TLYVNSRRKL RPFFRACLIS LACSDLVSSI FCTVSYMAQF QAQYLQLWTI 120
  121 GGFMCKFVPF ITTTSVLSGS LTLVAIALDR YLAVMRPVLG FWSPDKRFST LSMLLIWACS 180
  181 IGSSGPLLGI YDYRKIYLLD VEDSREESEE VVTAVPEELV VTELEMVHMC LAGDHDVGLY 240
  241 YVILFTLIFL PCIVSFLWLN AVIARQLWLR RHYHQEQQEQ HQEPKEGQFK TMANGGDLLM 300
  301 PSTLVSAMGV AVPFALDNTP LPPKSTVNAP GKKTTAAALA REARHRKMVV VVLLMMAVFI 360
  361 CLRLPAWVFL IMRLYGSYSE PIDWLLYFSF GILNLFSCAL NPIFYTFLTQ TIRTLTLVKH 420
  421 KIQGFLGCPP GKVPDGMPTD QMDKSRCCCG LRPPTFTWRC HPSRDRAAAT VIRDVDQPDP 480
  481 SSDQVQPDPS SLRRFLSYKQ EVFTIYKQCG DSSSASIESS A

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.88
Transmembrane Helix	52	74	0.88
Cytoplasmic	75	85	0.84
Transmembrane Helix	86	108	0.92
Non-Cytoplasmic	109	126	0.89
Transmembrane Helix	127	148	0.92
Cytoplasmic	149	167	0.89
Transmembrane Helix	168	190	0.91
Non-Cytoplasmic	191	238	0.97
Transmembrane Helix	239	262	0.91
Cytoplasmic	263	348	0.97
Transmembrane Helix	349	371	0.91
Non-Cytoplasmic	372	384	0.90
Transmembrane Helix	385	408	0.89
Cytoplasmic	409	521	0.97