YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84794310
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKKSSAWQ KLMNYPGSSA STKWSLPRGR SLQRMAHNLR VTILCGFVTV LVLRGTIGTS  60
   61 FGSQRKGTVE HSAQPKIFSD EKSSREPRRV LSATTEPETD IEPVLDSSLP YKLGPHISNW 120
  121 DEQRAMWLQK HPRMAKTSRG RDRILLVTGS QPKPCDNPAG DHLLLKSLKN KMDYCRLHDM 180
  181 EIFYNMAHLD QEMAGFWAKL PLLRKLMLQH PEVEWIWWMD SDAMFTDMLF ELPIDKYKDH 240
  241 NMVLHGFDEM VYKMKSWVGL NTGSFLLRNC QWSLDLLDAW APMGPKGVVR VEAGKQLTAT 300
  301 LTGRPEFEAD DQSALIFLLV TQARLWASKV FLENQYYLHG YWVILVERYE EMMQKNKPGT 360
  361 GDDRWPFVTH FVGCKPCGSY GDYSVERCLK QMERAFNFGD NQILEHYGFQ HRTLETYKVR 420
  421 RIRNDTSNPL GLRQLPAIIT KSDRIATHLT ASDT

Type	Start	End	Confidence
Cytoplasmic	1	37	0.76
Transmembrane Helix	38	58	0.73
Non-Cytoplasmic	59	454	0.99