YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83752652, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVNASFSQ NISIVHPENF FIIGLTGIQH SGYYYIFLFF TYFISVIGNS VVLLIIALER  60
   61 NLHSAKYIGV FNLALADIGE TSALIPNMMK NFLFDSQYIS YNGCMANMFF VFLFSSMQSF 120
  121 TLVVMAYDRL IAICLPLRYH AIVNNTSMIL MTLAIWAFNT FVVALMVSLI NRLSFCESNM 180
  181 IQSYFCDHGP VFRLACNDNS MNKIMAYVIS VLYILAPMVV IVFSYLAIFL ALIKITTWEG 240
  241 RLKALKTCVS HLLLVGIFFL PVCCTYIAQV LLYLTPNARI ISTSFSYAVP PVLNPIIYVL 300
  301 NTAEIKDIIK KMIKNKSAPI RENISK

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.52
Transmembrane Helix	35	58	0.89
Cytoplasmic	59	66	0.83
Transmembrane Helix	67	86	0.86
Non-Cytoplasmic	87	105	0.82
Transmembrane Helix	106	127	0.87
Cytoplasmic	128	147	0.73
Transmembrane Helix	148	170	0.82
Non-Cytoplasmic	171	208	0.95
Transmembrane Helix	209	233	0.87
Cytoplasmic	234	248	0.88
Transmembrane Helix	249	272	0.89
Non-Cytoplasmic	273	282	0.78
Transmembrane Helix	283	302	0.64
Cytoplasmic	303	326	0.68