YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83752620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSNNKQDF LGDCVFKSFF VVLLGVIINC INSILLYTFF KNPVLAQEPR YILYTQLIIN  60
   61 DIITLSVGVT LYVFTCLLPN LNVAICCVLV LIASNVFKNT PLNLAGMAIE RFVAVCYPLH 120
  121 HAQICTVQNT KILIGIIWLM GALPGMLDFL VVLALRPLSF FTSNRICFLQ NVFDFEYHVI 180
  181 SHAVFNIVYM CSVWVLLFYT YFKVLFSAKA AASEPAQAQK ARRTILLHGV QLLLCTLSLL 240
  241 TTVLDGALTS RFPDYRQIIY YCTFILTSIL PRLLSPLIYG LRDQTFKKYM KSSFMCSTKT 300
  301 FVSPEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.48
Transmembrane Helix	18	40	0.90
Cytoplasmic	41	51	0.47
Transmembrane Helix	52	74	0.62
Non-Cytoplasmic	75	75	0.39
Transmembrane Helix	76	97	0.74
Cytoplasmic	98	133	0.80
Transmembrane Helix	134	155	0.90
Non-Cytoplasmic	156	181	0.88
Transmembrane Helix	182	202	0.93
Cytoplasmic	203	224	0.90
Transmembrane Helix	225	248	0.87
Non-Cytoplasmic	249	256	0.92
Transmembrane Helix	257	281	0.83
Cytoplasmic	282	306	0.94