YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83752534, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNQTFQYSK LLVEGLQVTS QSTLPTFILL LMVYAFIMVS NIGMMIQISA DKCLHQPMYV  60
   61 LFCNLTLNDV LGTTVILPGL LRNILTDPSE RHITFVECVI QAYFAHLNGT ASHTVIMIMA 120
  121 FDRYVAICNP LRYPAIMTSN MVVKLSAAAW GVAVVLVGIL IGLSVRLSHC RSVIQNYICD 180
  181 NASLFKLSCE NTVINNVYGL TFTVVLFTSS MGSIVLTYLK IALICFKSKN KATNSKAIKT 240
  241 CSTHLTVYII MLISGSTAIS LHRFPVYAET RKLADIIFHV IPPGLNPIIY GIQSKEIRQK 300
  301 IFKLFRNDLN AK

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.71
Transmembrane Helix	24	46	0.85
Cytoplasmic	47	57	0.66
Transmembrane Helix	58	81	0.68
Non-Cytoplasmic	82	101	0.74
Transmembrane Helix	102	125	0.64
Cytoplasmic	126	141	0.86
Transmembrane Helix	142	165	0.86
Non-Cytoplasmic	166	199	0.93
Transmembrane Helix	200	224	0.85
Cytoplasmic	225	243	0.86
Transmembrane Helix	244	262	0.91
Non-Cytoplasmic	263	275	0.75
Transmembrane Helix	276	293	0.66
Cytoplasmic	294	312	0.69