YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83752468, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKNWTTIS EFIIVGIPGL HPDYYGLVSA IFFVIYITTV AGNMFFLVLF VTTESLRKPM  60
   61 YIILASLALS DMCFSTVALP KIISKYWFNA GATPFHACFF QMELIHYFGS LNSLIMMIMA 120
  121 LDRYVAICYS LRYQTVMTNR VTYILITTAW ITAFIAPTVA TLDTQQLPYC GPNLILQCYC 180
  181 DHISITNLAC AENSKQLLVA LCMALLVLLL PLVCIIYSYC HIIASVMRLS SSQSRWKSFA 240
  241 TCSTQLCIIT LFYMPRFTVY LTTFLQIQIS KDFRILLVLI YCLVPPLVNP FIYCLRTQEI 300
  301 RMIVSRWVSR QQALRVACKI NVITL

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.62
Transmembrane Helix	30	51	0.93
Cytoplasmic	52	60	0.85
Transmembrane Helix	61	83	0.92
Non-Cytoplasmic	84	103	0.92
Transmembrane Helix	104	125	0.89
Cytoplasmic	126	140	0.85
Transmembrane Helix	141	161	0.92
Non-Cytoplasmic	162	196	0.97
Transmembrane Helix	197	220	0.89
Cytoplasmic	221	237	0.82
Transmembrane Helix	238	257	0.88
Non-Cytoplasmic	258	274	0.82
Transmembrane Helix	275	295	0.92
Cytoplasmic	296	325	0.94