YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIT2_XENTR
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFRLSLVQ FLVSPVKSEN LNRACKLIKE AAQKGAQIVA LPECFNSPYG TKYFPEYAEK  60
   61 IPGESTERLS QVAKECGIYL IGGSIPEEDS GKLYNTCAVF GPDGTLLVKH RKIHLFDIDV 120
  121 PGKIRFQESE TLSPGDSFSV FETPYCKVGV GICYDIRFAE LAQLYSKKGC QLLVYPGAFN 180
  181 MTTGPAHWEL LQRARALDNQ VYVATASPAR DEKASYVAWG HSTIVSPWGE VIAKAGSEET 240
  241 VISADIDLEY LAEIREQIPI RRQRRHDLYS VEEKKN

Type	Start	End	Confidence
Signal Peptide	1	18	0.96
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	276	0.99