YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_SHESM
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSADITVL GAGSYGTALA ISLASNGHKT LLWGHDPAHM QTLAQDKCNQ AFLPGIAFPE  60
   61 CLHIEADLAK ALAASNNVLV VVPSHVFGSV LAQAKPLLRQ DARIVWATKG LEPETGRLLQ 120
  121 DVARDVLGEQ YPLAVLSGPT FAKELAMGLP TAISVAGTCP KFTAELVELL HSPKRLRVYA 180
  181 NDDFIGLQLG GAVKNVIAIG AGMSDGIGFG ANARTALITR GLVELTRLGE ALGASTATFM 240
  241 GMAGLGDLVL TCTDNQSRNR RFGLALGKGC DVDTAQAEIG QVVEGYRNTK EVFTLAKRMG 300
  301 VEMPITEQIY QVLYQGKAPL DAAKELLSRE KKSETPAQ

Type	Start	End	Confidence
Signal Peptide	1	20	0.66
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	338	0.87