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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VM3E1_ECHOC
Protein type: Globular with Signal Peptide
Type Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLLITISL AVLPYLGSSI ILESGIVNDY EVVNPQKVTA MLKGAVKQPE QKYEDTMQYE  60
   61 FKVKGEPVVL HLEKNKGLFS EDYSETHYSP DGREITTNPP VEDHCYYHGR IQNDADSSAS 120
  121 ISACNGLKGH FKLRGEMYFI EPLKIPDSEA HAVYKYENIE EEDEAPKMCG VKHTNRESDK 180
  181 SIKKASQLNL TPEQQRYLNT PKHIKVAIVA DYLIFRKYGR NLFTIRAKIY EILNILNEIY 240
  241 KAFNIHVALV FLEIWSNGDK INLFPAANVT LDLFGKWRER DLMNRKNHDN TQLLTGMNFD 300
  301 GPTAGLGYVG TMCHPQFSAA VVQDHNKINF LVALAMAHEL GHNLGMTHDE QFCTCGAKSC 360
  361 IMSATLSCEG SYRFSNCSRE ENRRYLINKM PQCILIKPSR TDIVSPPVCG NSLVEVGEDC 420
  421 DCGSPGYCRN PCCNAATCKL TPGSQCADGE CCDQCRFTRA GTECRPARDE CDKADLCTGQ 480
  481 SAECPADQFQ RNGQPCQNNS GYCYNGICPV MRNQCISLFG SRAIVAEDAC FQFNSLGIDY 540
  541 GYCRKENGRK IPCAPEDVKC GRLYCFDNLP EHKNPCQIFY TPRDEDKGMV DPGTKCENGK 600
  601 VCINGKCVDV NTAY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle