YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83318984
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRPLKASAA NNQRRPITVL LLVFCAVVFS LLVLIIQTSF TGNQNHNIKA ETIQILTNFQ  60
   61 SSVQQCVANR GFGLTAHIVD HCKLVLKFPK STNSSWYNEQ FKHYEPLEYS YDVCEAILLW 120
  121 EQYRNMTTVL TREYLDARPD GWLDYAAQRI AQLGAKKCYN RSLCEDHLNL ILPSKPPFHP 180
  181 RQFGTCAVVG NSGDLLKTEF GEEIDRHDVV IRDNEAPVNE KYAKYVGLKR DFRLIVRGAA 240
  241 RNMVSILNGS DDEVLIIKSV THRDFNTMIK SVPNPVYLFQ GIVLRRGAKG TGMKTIELAL 300
  301 SMCDVVDIYG FTVDPGYTVW TRYFSTPRKG HNPLQGRAYY QLLECLGVIR IHSPMRAARF 360
  361 QDWSDVPSRE TIAQAHTAAL YLKRSKAGEV GNLGPFGSCK VWGDADLDGG KVSGSPDMSD 420
  421 TRKNSNYSRW EVLPFHSLRK EAQEHYFQMG GVSLYKMDGN KLDDLVCVRH TNKSNN

Type	Start	End	Confidence
Signal Peptide	1	41	0.69
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	476	0.99