YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71794525, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTTPPRIS VRTDAASACA GVRCAAWWLI LAVSFPSINF RSKSCFMTQT ESAILAHARR  60
   61 CAPAESCGFV ISTPEGERYI PCVNISAEPE AYFRIAPEDW LRAEMQGEIV ALVHSHPGGL 120
  121 PWLSEADRRL QIKSALPWWL VCRGDIHKFR CVPHLTGRRF EHGVTDCYTL FRDAYHLAGI 180
  181 DMPDFEREDD WWRNGQNLYL DNMAVTGFYR VPLSSAQAGD ILLCCFGASV ANHAAIYCGN 240
  241 GELLHHLPEQ LSKRERYSEK WQRRTHSVWR HRHWHASAFT GIYNDLAAAS ACM

Type	Start	End	Confidence
Cytoplasmic	1	18	0.50
Transmembrane Helix	19	33	0.60
Non-Cytoplasmic	34	293	0.95