YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77551892, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGRQYWGGG RRPSGGGGGV VVMFAWLSSQ ERQVRAYVEL YAALGWACLV CHSEFLTLFF  60
   61 PDKAAMLADR VLAELVKELK VRPVPVVFAS FSGGPKGCTY KVLQLIERRC EGQLSLEEYQ 120
  121 LVRDCLCGQM YDSSPVDFVS DLGTRFLLHP SVLKMSQPPR ILSWMTRGIA SGLDTLFIGK 180
  181 FEAQRAEYWD TLYSSVHVGP ILIFCSEDDE LAPCSIVQKF GRRLLELGGD VNLVKWQNSP 240
  241 HVGHYKHHPE EYRAAVTELL TKASMLYMSR RQLNSYDLGT SEHSDMLASD VHKAGTNSNN 300
  301 RLRRAPDDPI DHFLLPSSME YHESSNEEPK PELFNMPSVE SINNPHGVLG QMLYDVCVPK 360
  361 NVEGWDFKPS ASINGRHINS IARQHGTFNP IKCIRRSKL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.68
Transmembrane Helix	9	27	0.78
Non-Cytoplasmic	28	399	0.76