YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77551216, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATAAATRL LLPPLRAPPP SLAGGAAAAA GGGGRWRGAV PRRARARRAV VPPRASLVDS  60
   61 SGGAAAAAVL LDAAVAGATG YSQASYYTSL GLFVLSVPGL WSLIKRSVKS KVVQKTFVKE 120
  121 EGQTMAPNQV AGEILSFFTR NNFTISDRGE VITFEGTMVP SRGQAALLTF CTCISLGSVG 180
  181 LVLSIAVPEG GNNWFWLMTL SPLAGVYYWT KASRKEEIKV KMILSDDGNV SEILVRGDDV 240
  241 QVEQMRKELK FSEKGMIYVK GIFET

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.90
Transmembrane Helix	17	39	0.79
Cytoplasmic	40	54	0.95
Transmembrane Helix	55	76	0.90
Non-Cytoplasmic	77	83	0.78
Transmembrane Helix	84	104	0.93
Cytoplasmic	105	165	0.98
Transmembrane Helix	166	187	0.95
Non-Cytoplasmic	188	193	0.86
Transmembrane Helix	194	212	0.92
Cytoplasmic	213	265	0.98