YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77556187, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.48
Transmembrane Helix	32	55	0.78
Cytoplasmic	56	63	0.51
Transmembrane Helix	64	85	0.63
Non-Cytoplasmic	86	89	0.57
Transmembrane Helix	90	110	0.79
Cytoplasmic	111	120	0.77
Transmembrane Helix	121	144	0.88
Non-Cytoplasmic	145	153	0.59
Transmembrane Helix	154	176	0.80
Cytoplasmic	177	195	0.69
Transmembrane Helix	196	216	0.93
Non-Cytoplasmic	217	233	0.71
Transmembrane Helix	234	256	0.87
Cytoplasmic	257	288	0.74
Transmembrane Helix	289	310	0.93
Non-Cytoplasmic	311	335	0.71
Transmembrane Helix	336	358	0.86
Cytoplasmic	359	492	0.71
Transmembrane Helix	493	512	0.60
Non-Cytoplasmic	513	553	0.63
Transmembrane Helix	554	580	0.83
Cytoplasmic	581	711	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESFVPLRG IKNDLHGRLQ CYKQDWTGGF RAGIRILAPT TYIFFASAIP VISFGEQLER  60
   61 NTDGVLTAVQ TLASTALCGI IHSFLGGQPL LILGVAEPTV LMYTFMFNFA KDRPDLGRRL 120
  121 FLAWTGWVCV WTAILLFLLA ILGACSIINR FTRIAGELFG LLIAMLFMQQ AIKGLVDEFR 180
  181 IPERENRKAL EFVSSWRFAN GMFAIVLSFG LLLTALRSRK ARSWRYGTGW LRGFIADYGV 240
  241 PLMVLVWTGV SYIPYGSVPK GIPRRLFSPN PWSPGAYDNW TVIRDMPNVP LLYIIGAFIP 300
  301 ATMIAVLYYF DHSVASQLAQ QKEFNLRKPP SFHYDLLLLG FLTLLCGLIG IPPANGVIPQ 360
  361 SPMHTKSLAT LKHQLLRNRL VATARQSMSQ NASLSQLYGS MQEAYQQMQT PLIYQQPSVK 420
  421 GLNELKDSTV QMASSMGNID APVDETVFDI EKEIDDLLPI EVKEQRLSNL LQATMVGGCV 480
  481 AAMPLLKKIP TSVLWGYFAF MAIESLPGNQ FWERILLLFT APSRRYKVLE EYHTTFVETV 540
  541 PFKTIAMFTL FQTMYLLVCF GITWIPIAGV LFPLMIMLLV PVRQYILPKL FKGAHLTDLD 600
  601 AAEYEESPAI PFIAAQDIDV ALARTQSAEI LDDIVTRSRG EIKRLNSPKI TSSGGTPVAE 660
  661 LKGIRSPCIS ERAYSPCITE LRHDRSPLGG RGSPRTGETR SSKLGEGSTP K