YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115488824, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	37	0.87
Transmembrane Helix	38	57	0.94
Cytoplasmic	58	68	0.83
Transmembrane Helix	69	91	0.89
Non-Cytoplasmic	92	97	0.83
Transmembrane Helix	98	119	0.90
Cytoplasmic	120	131	0.85
Transmembrane Helix	132	153	0.88
Non-Cytoplasmic	154	179	0.90
Transmembrane Helix	180	200	0.92
Cytoplasmic	201	212	0.80
Transmembrane Helix	213	233	0.86
Non-Cytoplasmic	234	245	0.79
Transmembrane Helix	246	265	0.94
Cytoplasmic	266	276	0.69
Transmembrane Helix	277	297	0.90
Non-Cytoplasmic	298	300	0.72
Transmembrane Helix	301	321	0.88
Cytoplasmic	322	373	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKASMKPYF VAIIVQLIYT GMFVISKAAF NHGMNTYIFI FYRQAVGSLI LLPAALLQRK  60
   61 SARQVMTLGV LIKLFFCALI GITLGVNLYH VSLKFTSATV ASAVDSSLPA ITFFLAVLLR 120
  121 TEYVKLRSSS GIAKVTSVAL CLAGVFTIAF FTGPSISPIN HHRAFASDAG SKNVVPRGVW 180
  181 IKWTFLMVIA NMCWSLWIIF QAAVQKEYPD KMIVTLTQCL FSTVQSFVVA VVAERDFSKW 240
  241 KLRFDISLLA ILYSGVMVTG VSYYLQTWCL EMRGPMFFAS WTPLCFVFTI FCSSFFLGEI 300
  301 VHLGSILGGI LLVGSLYTML WGKSKEGNET DDVTDDDIEK STHIYPREQQ HTTTDQDKES 360
  361 TLTGSAALHV QEL