YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83318894
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPRFSRKP ALVRLLSVAA LFSIILIAIQ SSFFTGSRAP VNLDIPILSH FQSNLQQCVA  60
   61 NRGLGLTAHI IDHCSVILKF PQGTNSTWYN EQFKIFEPLE YKYDVCEAIL LWEQYRNMTT 120
  121 VLTREYLDSR PDGWFDYAAK RIAQLGADKC YNQTLCEEHL NLTLPAKPPF HPRQFRRCAV 180
  181 VGNSGDLLKT QFGEEIDSHD AVIRDNEAPV NERYAKHVGL KRDFRLVVRG AAGNMIKILN 240
  241 GSDDEVLIIK SVIHRDFNAM IKKIRNPVYL FQGIVLRRGA KGTGMKSIEL ALSMCDIVDI 300
  301 YGFTVDPGYT EWTRYFSTPR KGHNPLQGRA YYQLLECLGV IRIHSPMRAK RKQDWSDVPS 360
  361 REMINNAHRA ALHLKKKQAG QEGGLGRFVN CKVWGKSGPY GTGPVSGSTD MTDTRKESNY 420
  421 NRWEIMPFES LREEARKHYM QMEGVSLYKM DGNKLDDLVC VKHPLKSEA

Type	Start	End	Confidence
Signal Peptide	1	31	0.76
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	469	0.99