YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39276
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLDLPRCEK GSSGKLSDEE LLARTIEKAL KTKKLAQSPN MTSSIKVETS IKVEDLLDQI  60
   61 GIWHPYPLFI TFSMAFLWLL SVMPTMSPSY MAPSSPCTLD NCSFVTVQNE FNITKTLIDP 120
  121 GEMTSSIFFL GNGILGQIYA VAADRIGRRP VLIASLFISG LSGIGAAYAP TFEIMLIGRF 180
  181 FQGSCFTALT MINWVMCCES ISFSGHGYAS VLFGLCWVIG YCSVSPLAMY FSTWRYVQLA 240
  241 TSVPCVLFGI LMMFTLPESF SFLVAKRKRD DLVKWIEMAS RVGNEEIDYD ADQIVDMSSR 300
  301 EEDNESLLQT LKLVLQSKLM VTNTAVETFL WKFFDKIFTI LKY

Type	Start	End	Confidence
Cytoplasmic	1	61	0.96
Transmembrane Helix	62	82	0.88
Non-Cytoplasmic	83	122	0.88
Transmembrane Helix	123	143	0.86
Cytoplasmic	144	150	0.88
Transmembrane Helix	151	170	0.95
Non-Cytoplasmic	171	177	0.73
Transmembrane Helix	178	197	0.91
Cytoplasmic	198	207	0.76
Transmembrane Helix	208	230	0.89
Non-Cytoplasmic	231	238	0.74
Transmembrane Helix	239	260	0.87
Cytoplasmic	261	343	0.95