YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39275
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSISLPTSL VTDTLLEDEE YDFLKKGSSG KLSDEELLAR TIEKALKTKK LAQSPNMTSS  60
   61 IKVETSIKVE DLLDQIGIWH PYPLFITFSM AFLWLLSVMP TMSPSYMAPS SPCTLDNCSF 120
  121 VTVQNEFNIT KTLIDPGEMT SSIFFLGNGI LGQIYAVAAD RIGRRPVLIA SLFISGLSGI 180
  181 GAAYAPTFEI MLIGRFFQGS CFTALTMINW VMCCESISFS GHGYASVLFG LCWVIGYCSV 240
  241 SPLAMYFSTW RYVQLATSVP CVLFGILMMF TLPESFSFLV AKRKRDDLVK WIEMASRVGN 300
  301 EEIDYDADQI VDMSSREEDN ESLLQTLKLV LQSKLMVTNT AVETFLWKFF DKIFTILKY

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	98	0.88
Non-Cytoplasmic	99	138	0.89
Transmembrane Helix	139	159	0.87
Cytoplasmic	160	166	0.88
Transmembrane Helix	167	186	0.95
Non-Cytoplasmic	187	193	0.73
Transmembrane Helix	194	213	0.91
Cytoplasmic	214	223	0.76
Transmembrane Helix	224	246	0.89
Non-Cytoplasmic	247	254	0.74
Transmembrane Helix	255	276	0.87
Cytoplasmic	277	359	0.95