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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62177117, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGELLPSS PASSTTPTSS SAPSVASAVS KSSLSTGAAS LSSTASPCVL EAGKSKIKVS  60
   61 PDSVSGAEWW RTTDGHSRAG TPFFPPLLGI PPLFAPPAQN HDSSFHSRTS GKSSRNGPEK 120
  121 GINGSVNGTS AASVLGVNAS VVATPASSSM GQNQSTSSGG GTLKCHQEQN KSQPVDARAD 180
  181 RIKDKKPRKK AMESSSNSDS DSGTSSDTSS EGISSSDSDD LEEEEEEDQS VEESEDDDSD 240
  241 SETEAQHKSN NQVLLHGISD PKTDGQKATE KAQERRTHQP LPPVSESQTH PPFQSQQKQP 300
  301 QVLSQQLPFI FQSSQAKEES VTKHTSVIQS TGLVSNVKPL SLVNQAKKET YRKLVVPSPD 360
  361 VLKAGNKNTS EESSSLTSEL RSKREQYKQT FPSQGKKQEM GKSLKKVIAA LSNTKATSSS 420
  421 PAHPKLPLDN NHPNPFLTNA LLGNHQPNGV IQSVIQEAPL ALTTKTKMQS KINENVSSST 480
  481 PFSSPVNLST SGRRAPGSQT PALPSASPIL HSSGKEKRVS NDATPLKAHH HPHPAAAAAA 540
  541 LVEQFRGTDS DVPSSKDSED SNEDEEEDDE EEDEEDDEDD ESDDSQSESD SNSQSDSEGS 600
  601 EDDEEKDQEE SDSDTEGEKP AVNLTQTSSS AKSPPSSLTA HSAPHLHIGS PPGSAPAALC 660
  661 SESQPPAFLG TSSSTLTSTP HSGTSKRRRV ADDQELRIPL DYGWQRETRV RNFGGRLPGE 720
  721 VAYYAPCGKK LRQCPDMVKG MQWCLLKEED VIPRIRAMDG RRGRPPNPDR PRAREESRMK 780
  781 RRKGRPPNVG SAEFLDNTDA KLLRKLQAQE IARQAAQIKL LRKLQKQEQA RVAKEAKKQQ 840
  841 AIMAAEEKRK QKEQMKIIKQ QEKIKRIQQI RMEKELRAQQ ILEAKKKKKE EAANAKLLEA 900
  901 EKRTKEKELR RQQAVLLKHQ ERERRRQHVM LMKAMEARKK AEEKERLKQE KRDEKRLNKE 960
  961 RKLEQRRLEL EMAKELKKPK EDMCLADQKP LPEWPRIPGL VLSGTTFSDC LMVVQFLRNF1020
 1021 GKVLGFDVNI DVPNLSVLQE GLLNIGDSMG EVQDLLVRLL SAAVCDPGLI TGYKAKTALG1080
 1081 EHLLNVGVNR DNVSEVLQIF MEAHCGQTEL TESLKTKAFQ AHTPAQKASI LAFLVNELAC1140
 1141 SKSVVSEIDK NIEYMSNLRR DKWMVEGKLR KLRIIHAKKT GKRDASGGID LGEEQHPLGT1200
 1201 PTPGRKRRRK GGDSDYDDDD DDDSDDQADE DEEDEEDKDD KKGKKTDICE DEDEGDQTAS1260
 1261 VEELEKQIEK LSKQQSQYRR KLFDASHSLR SMMFGQDRYR RRYWILPQCG GIFVEGMESG1320
 1321 EGLEEIAKEK EKLKKAESLQ IKEEVFETSA ETLNCSIRDH CEQKDDPKEK DNTNLFLQKP1380
 1381 GSFSKLSKLL EVAKMPPESD VMTPPKVNVS TNGGPLSHQN SGKHPLGSVP SATTAQSPVG1440
 1441 KTDASLFSSG SGSCGKFYSP LPNDQLLKTL TEKNRQWFSL LPKTPCDDTS LTHADLSTTL1500
 1501 VTPQSQPPSK SPSPAPAALL GPSSVQSPPG LNPFALSPLQ VKGGVSMMGL QFCGWPAGVL1560
 1561 ASNVPFTSPL PALGSGLGLP EGNGSSSFLT SSVASSKSDS PVPPAERPSS AQPVAVEVAK1620
 1621 PVDFPSPKPI PEEMQFGWWR IIDPEDLKTL LKVLHLRGIR EKALQKQIQK HLDYITQACV1680
 1681 RNKDVAIIEL NENEDNQVTR DLVENWSVEE QAMELDLSIL QQVEDLERRV ASASLQVKGW1740
 1741 MCPEPASERE DLVYFEHKSL TKLFKEHDGE LTGDEENSAH ALARKSDNPL DIAVTRLADL1800
 1801 ERNIERRYLK SPLSTTIQIK LDNVGTVTVP APAPSISGDG DGIEEDIAPG LRVWRRALAE1860
 1861 ARSAAQVALC IQQLQRSIAW EKSIMKVYCQ ICRKGDNEEL LLLCDGCDKG CHTYCHRPKI1920
 1921 TTIPDGDWFC PACISKASGQ SIKIKKIHVK GKKTNDSKKT KKGNVAGDTE DEDSASTSSS1980
 1981 LKRGSKELKK RKMEETTSLN LSKAESTTSI KKPKKDESRD LALCSMILTE METHEDSWPF2040
 2041 LLPVNLKLVP GYKKVIKKPM DFSTIREKLN NGQYPNFETF ALDVRLVFDN CETFNEDDSD2100
 2101 IGRAGHSMRK YFEKKWTDTF KVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle