YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MARH6_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.77
Transmembrane Helix	92	112	0.61
Non-Cytoplasmic	113	140	0.73
Transmembrane Helix	141	163	0.86
Cytoplasmic	164	289	0.98
Transmembrane Helix	290	312	0.89
Non-Cytoplasmic	313	332	0.92
Transmembrane Helix	333	355	0.90
Cytoplasmic	356	369	0.77
Transmembrane Helix	370	392	0.87
Non-Cytoplasmic	393	420	0.95
Transmembrane Helix	421	442	0.94
Cytoplasmic	443	479	0.94
Transmembrane Helix	480	499	0.97
Non-Cytoplasmic	500	519	0.88
Transmembrane Helix	520	540	0.86
Cytoplasmic	541	631	0.96
Transmembrane Helix	632	656	0.94
Non-Cytoplasmic	657	673	0.92
Transmembrane Helix	674	698	0.88
Cytoplasmic	699	718	0.87
Transmembrane Helix	719	742	0.88
Non-Cytoplasmic	743	763	0.91
Transmembrane Helix	764	784	0.92
Cytoplasmic	785	804	0.93
Transmembrane Helix	805	827	0.88
Non-Cytoplasmic	828	847	0.79
Transmembrane Helix	848	866	0.96
Cytoplasmic	867	909	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTAEEDICR VCRSEGTPEK PLYHPCVCTG SIKFIHQECL VQWLKHSRKE YCELCKHRFA  60
   61 FTPIYSPDMP SRLPIQDIFA GLVTSIGTAI RYWFHYTLVA FAWLGVVPLT ACRIYKCLFT 120
  121 GSVSSLLTLP LDMLSTENLL ADCLQGCFVV TCTLCAFISL VWLREQIVHG GAPIWLEHAA 180
  181 PPFNAAGHHQ NEAPVGGNGA ENPAADQPAN PAGENAVLGE NPDAQDGQAE EEEEDNEEED 240
  241 DAGVEDAADA NNGAQDDMNW NALEWDRAAE ELTWERMLGL DGSLVFLEHV FWVVSLNTLF 300
  301 ILVFAFCPYH IGHFSLVGLG FEEHVQASHF EGLITTIVGY ILLAITLIIC HALATLVKFH 360
  361 RSRRLLGVCY IVVKVSLLVV VEIGVFPLIC GWWLDICSLE MFDATLKDRE LSFQSAPGTT 420
  421 MFLHWLVGMV YVFYFASFIL LLREVLRPGV LWFLRNLNDP DFNPVQEMIH LPIYRHLRRF 480
  481 ILSVIVFGSI VLLMLWLPIR IIKSLLPNFL PYNVMLYSDA PVSELSLELL LLQVVLPALL 540
  541 EQGHTRQWLK GLVRAWTVTA GYLLDLHSYL LGDQEENENS ANQQVNNNQP ARNNNAVPAG 600
  601 EGLHAAHQAI LQQGGPVGFQ PYRRPLNFPL RIFLLIVFMC ITLLIASLIC LTLPVFAGRW 660
  661 LMSFWTGTAK IHELYTAACG LYVCWLTIRA VTVLVAWMPQ GRRVIFQKVK EWSLMIMKTL 720
  721 IVAVLLAGVV PLLLGLLFEL VIVAPLRVPL DQTPLFYPWQ DWALGVLHAK IIAAITLMGP 780
  781 QWWLKTVIEQ VYANGIRNID LHYIIRKLAA PVISVLLLSL CVPYVIASGA VPLLGVTAEM 840
  841 QNLVHRRIYP FLLMVVVLMG ILSFQVRQFK RLYEHIKNDK YLVGQRLVNY ERKSGKQGPS 900
  901 TPPPVSSQE