YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82658256, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	31	0.90
Non-Cytoplasmic	32	42	0.82
Transmembrane Helix	43	63	0.90
Cytoplasmic	64	69	0.78
Transmembrane Helix	70	90	0.90
Non-Cytoplasmic	91	98	0.75
Transmembrane Helix	99	120	0.86
Cytoplasmic	121	130	0.89
Transmembrane Helix	131	153	0.90
Non-Cytoplasmic	154	160	0.83
Transmembrane Helix	161	181	0.95
Cytoplasmic	182	219	0.98
Transmembrane Helix	220	243	0.87
Non-Cytoplasmic	244	254	0.82
Transmembrane Helix	255	275	0.91
Cytoplasmic	276	282	0.84
Transmembrane Helix	283	302	0.91
Non-Cytoplasmic	303	307	0.72
Transmembrane Helix	308	326	0.90
Cytoplasmic	327	338	0.68
Transmembrane Helix	339	361	0.76
Non-Cytoplasmic	362	372	0.76
Transmembrane Helix	373	393	0.92
Cytoplasmic	394	400	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPAAKQKVI YITYLIAALE ITWMFLQFSI TPYLARRLGF DTIWFGYLQT TVGVIQLLGG  60
   61 PIYGRFADIF GARAALSVSC GASVFYFLPL TVADSPFMLF VHKLPAVFMH ALPGAQMVVA 120
  121 DLSEKEKRAE ALGKLGLCFG IGMIAGSSLG GTLSTRFGER FAASFGAVGS FVSLMLVLNF 180
  181 IPKQTKTQTT PESDEKGSSK SVFNMGEITR LMKFPGVAKT FTVKIISGLP TGIFQVMFSI 240
  241 IAMNFFQLKA EQNGYLMAYF GIVQMVIQGA VIGRLTSSFS ENSLLLLSVG VSSLVGLAQA 300
  301 LMTNVFQFCF IVIPMMFSLS VFNVITDSML TKSVSPADTG TMLGLCASVQ SLLRTVGPTI 360
  361 GGFLYETYGV PSFGYIQCVI NAAVFGLLLT TGGRSQTHRP