YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IMPA3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPMGIRLSP LGIAVFCLLG VGVIYHLYAG VLSSRLAFFR QKRTVDLREL LALSIDAAVQ  60
   61 GGREVKRIRE DNTLEEKSKG KTKEGASEKY TLGDLNSHRK MYYLIKNTFP NIQVNSEEHA 120
  121 NAEGEATVWT RMIPEDILAK VSGGKEIPAE KITVWIDPLD ATQEYTENLL KYVTTMVCVA 180
  181 VDGEPVIGVI HKPFTGYTVW GFVGEGSNVA PRDSYNTNSP KVIVSRSHAG KVKSFVQTAF 240
  241 GNNTEIIPAG GAGYKALALL NPTDDKQETA DIYIHVTYIK KWDICAGDAI LKSLGGQMTT 300
  301 LKGEQIDYSG LEGNKGGLLA SMKVDHKALV KRLPLWEDNK Q

Type	Start	End	Confidence
Cytoplasmic	1	9	0.81
Transmembrane Helix	10	30	0.91
Non-Cytoplasmic	31	341	0.94