YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85544265, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMEEKRLS AKKGLPPGTL VYTGKYREDF EIEVMNYSIE EFREFKTTDV ESVLPFRDSS  60
   61 TPTWINITGI HRTDVVQRVG EFFGIHPLVL EDILNVHQRP KVEFFENYVF IVLKMFTYDK 120
  121 NLHELESEQV SLILTKNCVL MFQEKIGDVF DPVRERIRYN RGIIRKKRAD YLLYSLIDAL 180
  181 VDDYFVLLEK IDDEIDVLEE EVLERPEKET VQRTHQLKRN LVELRKTIWP LREVLSSLYR 240
  241 DVPPLIEKET VPYFRDVYDH TIQIADTVET FRDIVSGLLD VYLSSVSNKT NEVMKVLTII 300
  301 ATIFMPLTFI AGIYGMNFEY MPELRWKWGY PVVLAVMGVI AVIMVVYFKK KKWL

Type	Start	End	Confidence
Cytoplasmic	1	295	0.95
Transmembrane Helix	296	316	0.93
Non-Cytoplasmic	317	327	0.84
Transmembrane Helix	328	348	0.95
Cytoplasmic	349	354	0.91