YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56384924
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLFLGIAGL LTAVLSGLPP PAPSDQHRNG SIPNMSSDPE EQLGIRLVNG SSRCSGFVQV  60
   61 LLESWEPVCA GHWNRAATEA ACNALGCGDL GNFTHLAPPT SERPPGATSR NTSSSRNTTW 120
  121 AGAPTVRCHG ANWQLCKVED YECSSDRRLV WVTCAENQAV RLVDGGSRCA GRVEMLQHGE 180
  181 WGTVCDDTWD LDDANVVCKQ LKCGWAVKSL AGLHFTPGQG PIHRDQVNCS GTEAYLWDCP 240
  241 GRPGDQYCGH KEDAGVVCSG SQRHPNLSTS EVPSRVPVTI ESSVPVSVKD KDSQNLTLLI 300
  301 PCIVLGILLL VSLIFIVFLL LKAKGQY

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	296	0.99
Transmembrane Helix	297	321	0.89
Cytoplasmic	322	327	0.93