YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73858311, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSSLFWKM TTLFGAVLLL LIPIMLIRQV IVERADYRSD VEDAIRQSTS GPQKLVGPLI  60
   61 AIPVTELYTV QEEDKTVERK RSFIHFWLPE SLMVDGNQNV EERKIGIYTG QVWHSDLTLK 120
  121 ADFDVSRLSE LDAPNITFGK PFIVISVGDA RGIGVVKAPE VNGTALTIEP GTGLEQGGQG 180
  181 VHIPLPEGDW RKQNLKLNMA LNLSGTGDLS VVPAGRNSEM TLTSNWPHPS FLGDFLPAKR 240
  241 EVSESGFQAQ WQSSWFANNL GERFASGNDT GWENFLAFSV AVTTPADQYQ LTDRATKYAI 300
  301 LLIALTFMAF FVFETLTAQR LHPMQYLLVG LSLVMFYLLL LALSEHIGFT VAWIIASLIG 360
  361 ALMNGIYLQA VLKGWRNSML FTLALLLLDG VMWGLLNSVD SALLLGTSVL VVALAGMMFV 420
  421 TRNIDWYAFS LPKMKASKEV TTDDELRIWK

Type	Start	End	Confidence
Signal Peptide	1	28	0.77
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	297	0.97
Transmembrane Helix	298	317	0.92
Cytoplasmic	318	323	0.86
Transmembrane Helix	324	343	0.92
Non-Cytoplasmic	344	348	0.79
Transmembrane Helix	349	368	0.94
Cytoplasmic	369	377	0.73
Transmembrane Helix	378	396	0.94
Non-Cytoplasmic	397	402	0.80
Transmembrane Helix	403	424	0.91
Cytoplasmic	425	450	0.95