YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74314526, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVIKKKHWW QSDALKWSVL GLLGLLVGYL VVLMYAQGEY LFAITTLILS SAGLYIFANR  60
   61 KAYAWRYVYP GMAGMGLFVL FPLVCTIAIA FTNYSSTNQL TFECAQEVLL DRSWQAGKTY 120
  121 NFGLYPAGDE WQLALSDGEI GKNYLSDAFK FGGEQKLQLK ETTAQPEGER ANLRVITQNR 180
  181 QALSDITAIL PDGNKVMMSS LRQFSGTQPL YTLDGDGTLT NNQSGVKYRP NNQIGFYQSI 240
  241 TADGNWGDEK LSPGYTVTTG WKNFTRVFTD EGIQKPFLAI FVWTVVFSLI TVFLTVAVGM 300
  301 VLACLVQWEA LRGKAVYRVL LILPYAVPSF ISILIFKGLF NQSFGEINMM LSALFGVKPA 360
  361 WFSDPTTART MLIIVNTWLG YPYMMILCMG LLKAIPDDLY EASAMDGADP FQNFFKITLP 420
  421 LLIKPLTPLM IASFAFNFNN FVLIQLLTNG GPDRLGTTTP AGYTDLLVNY TYRIAFEGGG 480
  481 GQDFGLAAAI ATLLFLLVGA LAIVNLKATR MKFD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.97
Transmembrane Helix	14	33	0.95
Non-Cytoplasmic	34	39	0.76
Transmembrane Helix	40	59	0.93
Cytoplasmic	60	67	0.89
Transmembrane Helix	68	91	0.92
Non-Cytoplasmic	92	279	0.99
Transmembrane Helix	280	306	0.88
Cytoplasmic	307	315	0.90
Transmembrane Helix	316	340	0.86
Non-Cytoplasmic	341	369	0.79
Transmembrane Helix	370	392	0.77
Cytoplasmic	393	420	0.77
Transmembrane Helix	421	444	0.71
Non-Cytoplasmic	445	483	0.91
Transmembrane Helix	484	506	0.91
Cytoplasmic	507	514	0.90