YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78519943, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPYRLLLA LAIALALALA GCTTLDPYTG EERTARATLG AGIGAAAGAA AGALTGSDSR  60
   61 DRRRRALIGA GIGALSGAAV GGYMDRQAEE LRQRLRGTGV SVTRDGENVI LNMPGHVTFA 120
  121 FDSADLRSDF FEVLDSVAIV ANEFDQTMIE VAGHTDSTGP AEYNQRLSER RAQTVARYLV 180
  181 GRDVAEMRMI AVGFGEERPI ASNQTEEGRQ QNRRVEITFL PITQ

Type	Start	End	Confidence
Signal Peptide	1	20	0.81
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	36	0.78
Transmembrane Helix	37	56	0.59
Cytoplasmic	57	65	0.53
Transmembrane Helix	66	84	0.59
Non-Cytoplasmic	85	224	0.95