YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114225845, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITIFGTGY VGLVTGTCFA EAGNDVLCVD IDEERIEQLN DGEVPIYEPG LEDMLACNMD  60
   61 EGRLRFTTDA AEGVAHGQFQ FIAVGTPPDE DGSADLSHVL AVARTIGEHI DDYRVVVDKS 120
  121 TVPVGTADRV HAAILEAMEA RGVDVAFDVV SNPEFLKEGA AIEDFMKPDR IIVGAENPAA 180
  181 VALMRDLYAP FNRNHDRLIF MDVRSAELTK YASNAMLATK ISFMNELSNL AERLGADIEE 240
  241 VRRGMGSDPR IGYHFIYPGC GYGGSCFPKD VQALARTARQ AHYEPELLDA VEAVNHRQKR 300
  301 HLVRRIRHYF EDNLERRTFA LWGLAFKPNT DDMREAPSRV IMEALWDAGA RVRAYDPEAQ 360
  361 DEAARLYPDE AGLELCGSPY DALEGADALI ICTEWQVFRS PDFDRMRRLL SEPVIFDGRN 420
  421 LYDPEKMLAA GFVYYGIGRG ESVDTLI

Type	Start	End	Confidence
Signal Peptide	1	20	0.90
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	447	0.99