YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82698040
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	54	0.87
Non-Cytoplasmic	55	70	0.86
Transmembrane Helix	71	92	0.93
Cytoplasmic	93	105	0.90
Transmembrane Helix	106	127	0.92
Non-Cytoplasmic	128	142	0.85
Transmembrane Helix	143	162	0.89
Cytoplasmic	163	182	0.88
Transmembrane Helix	183	203	0.93
Non-Cytoplasmic	204	227	0.89
Transmembrane Helix	228	248	0.91
Cytoplasmic	249	285	0.96
Transmembrane Helix	286	306	0.92
Non-Cytoplasmic	307	331	0.95
Transmembrane Helix	332	355	0.84
Cytoplasmic	356	362	0.83
Transmembrane Helix	363	386	0.87
Non-Cytoplasmic	387	406	0.90
Transmembrane Helix	407	428	0.87
Cytoplasmic	429	442	0.67
Transmembrane Helix	443	465	0.84
Non-Cytoplasmic	466	475	0.82
Transmembrane Helix	476	497	0.93
Cytoplasmic	498	515	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGTKQNKH QQKQPPSTTM QIQAPPTVLP TPTWKLILVA AIAAGVQFGW ALQLSLLTPY  60
   61 VQLLGIPHKW AAYIWLCGPI SGMLVQPIVG YYSDRCQSSF GRRRPYIASG AACVTISVIL 120
  121 IGFAADIGYK AGDDMTKHLK PRAVTVFVIG FWILDVANNM LQGPCRALLA DLCISDTRRM 180
  181 RSANAFFSFF MAVGNILGYA AGSYNDLYKI FPFSKTHACD LYCANLKSCF IISIALLISI 240
  241 TVVALTLVRE KQWTPEEFSS EESPSSGKIP VFGELFGALK DLPRPMLILL LVTCLNWIAW 300
  301 FPFILFDTDW MGREIYGGDA NTGKLYDQGV RAGSLGLLLN SVVLGLTSIA VEYLVRGVGG 360
  361 VKVLWGVVNF VLSIGLVMTV VVSKVAEHQR RYGSNGQVLP PSAGVKAGAL SLFSVLGIPL 420
  421 SITYSIPFAL ASIYSSGSGA GQGLSLGVLN LAIVVPQMIV SFLAGPFDSL FGGGNLPAFI 480
  481 VGAVSAAVSG VLAIVMLPKP SKDDATKLTL GGSYH