YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78515720, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCPPKRRED TLQQFKFRQL SLSHVIATAA SLAVLALTGP AMAADNPIVI KFSHVVAANT  60
   61 PKGLAADKFK ELAEKYTDGK VKVEVYPNSQ LYKDKEELEA LQLGAVQMLA PSNSKFGPIG 120
  121 IKEFEVFDLP YILPDLATLR KVTDGPLGAK LLKLLEPKGM IGLAYWDNGF KQMTANKKLV 180
  181 DPADYKGMKF RIQSSKVLDA QFRTLGAIPQ VMAFSEVYQA LQTGVVDGQE NTPSNIYTQK 240
  241 MHEVQKYITL TNHGYIGYVV VVNKKFWDSL PPDIRAACDK AMKEATEYGN GQSAKENDDA 300
  301 LEEIRKSGKS EFVKLTPAQD EAMRKAMMPV YKDVAGRVGQ PLIDEFLKET RGTTN

Type	Start	End	Confidence
Signal Peptide	1	43	0.99
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	355	0.99