YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78695248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGGMTALRR LVLRGLVRCA KAQNNSNATS LWFAPKPQRK VAPMTGILQN YLPLVVFIGV  60
   61 AAIIGVVLLI APFLVAYQQP DPEKLSAYEC GFNAFDDARM KFDVRFYLVA ILFIIFDLEV 120
  121 AFLFPWAVAF GKLGAAGFWS MLVFLAVLTV GFAYEWKKGA LEWD

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.68
Transmembrane Helix	52	76	0.88
Cytoplasmic	77	105	0.71
Transmembrane Helix	106	128	0.89
Non-Cytoplasmic	129	134	0.61
Transmembrane Helix	135	154	0.95
Cytoplasmic	155	164	0.68