YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78695198, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFFHHIFN TLSNGLLGYI VPFLFVLTIV VFFHELGHFL IARWAGVKVL TFSLGFGPEL  60
   61 IGFNDRHNTR WKISAIPLGG YVKFFGDESE ASTPSAEALA KMTPQERADS FHHKTVGQRA 120
  121 AIVAAGPIAN FILAVIIFAG MALYFGKPNT TPRVDAVQPD SVAAAAGFKN GDVIAAIDGR 180
  181 PIETFADMQR VVSVSAGSEL SFLIKRDGTE LTLKATPALK EVKDLFGNSH RIGVLGIQYN 240
  241 AKPDESRSIP VGFFESIKIG FEQVWFIIAT TFKFIASLFA GAGSAGDVGG PIRIAQLSGQ 300
  301 AASLGFQFVV QLCATLSVSI GLLNLFPVPL LDGGHLLFYG VEAVRGRPLS ERAQEMGFRI 360
  361 GLGLVLMLMV FATYNDILHL AGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.40
Transmembrane Helix	15	36	0.88
Cytoplasmic	37	43	0.33
Transmembrane Helix	44	63	0.64
Non-Cytoplasmic	64	119	0.57
Transmembrane Helix	120	145	0.85
Cytoplasmic	146	263	0.62
Transmembrane Helix	264	286	0.81
Non-Cytoplasmic	287	303	0.57
Transmembrane Helix	304	328	0.78
Cytoplasmic	329	355	0.60
Transmembrane Helix	356	378	0.87
Non-Cytoplasmic	379	383	0.68