YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78518557, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	59	0.89
Non-Cytoplasmic	60	72	0.85
Transmembrane Helix	73	95	0.90
Cytoplasmic	96	102	0.93
Transmembrane Helix	103	124	0.90
Non-Cytoplasmic	125	129	0.72
Transmembrane Helix	130	150	0.90
Cytoplasmic	151	157	0.77
Transmembrane Helix	158	175	0.93
Non-Cytoplasmic	176	181	0.65
Transmembrane Helix	182	202	0.91
Cytoplasmic	203	210	0.85
Transmembrane Helix	211	233	0.92
Non-Cytoplasmic	234	239	0.87
Transmembrane Helix	240	259	0.95
Cytoplasmic	260	267	0.74
Transmembrane Helix	268	288	0.88
Non-Cytoplasmic	289	292	0.78
Transmembrane Helix	293	312	0.90
Cytoplasmic	313	332	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPPSAAAA ARLDDVPTSL PQKPPVARKR APARTDRPFR GIALILLSTV FLGTSDVTAK  60
   61 YLSKTLPAIE ITWIRFTVFA LIMVPAMIPG SPLFAMRTER LPFQLLRGVA LLGSSIFFIT 120
  121 GLGYLPIAEA SATGFVAPLF VTALSIIFLG EKVGLRRWIA TAVGLCGVLI ILRPGTGAFH 180
  181 LAALFPIASA FSWACTLIMT RIMSGREHAI TIMTYSSIAG LCLLSAMVPF VWITPSWQDI 240
  241 GFGVLVGVAS TMGQWIVVLA FRYADASVLA PFSYTQLLWV SLLGFFVFGE VPSIWTVVGA 300
  301 AFIVSSGLYT AHRERVRRSQ LLQVAGESSP NP