YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78518535, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRIPTSLAQ KDAEPSRPKI LAISDSVMPG HVPGIRVVPS VPNDVDGRDR PGHDDLQTGE  60
   61 RIMLTFLARR LAQIIPTLIF VSILIFSLQQ LLPGDPALVM AGEERDPAVI EQIRKQYRLD 120
  121 QPLPVQYGYW IKGVLSGDFG ESLRIKMPVR DLILQKLPVT LQLASMAIVI AFLIGIPAGI 180
  181 ISAVKRGTAW DYAANLFALW GISTPNFWLG IMLIFVFSIQ LGWLPASGYV PLAEDWRASL 240
  241 AATIMPAFVL GNAIAAILMR HTRSAMLQVL GSDYIRTARA KGISERQVIL RHALRNALTP 300
  301 VITLGALELG TLLSGAVLTE QIFSIPGFGK LIVDAVFNRD YAVVQGVVLV TATVYIMLNL 360
  361 IADLAYVLVN PRLRS

Type	Start	End	Confidence
Cytoplasmic	1	70	0.98
Transmembrane Helix	71	92	0.91
Non-Cytoplasmic	93	162	0.97
Transmembrane Helix	163	184	0.91
Cytoplasmic	185	195	0.89
Transmembrane Helix	196	219	0.85
Non-Cytoplasmic	220	237	0.83
Transmembrane Helix	238	259	0.92
Cytoplasmic	260	296	0.95
Transmembrane Helix	297	319	0.87
Non-Cytoplasmic	320	345	0.86
Transmembrane Helix	346	367	0.88
Cytoplasmic	368	375	0.83