YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78518263, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSEAMTLDL ARLLLFPALM AFAAASDLFT MTISNRVSFA LLAGFLVLAP LSGMGMQDML  60
   61 SHVGAGALLL VVAFACFAFG WIGGGDAKVA SAAALWFGFA HLMNYLLYAS IFGGVLTLLL 120
  121 MQFRQWPLPY MLAGQPWLAR LHARESGVPY GIALALGALM VYPDTDWVKT IDAARFAMP

Type	Start	End	Confidence
Cytoplasmic	1	9	0.77
Transmembrane Helix	10	30	0.87
Non-Cytoplasmic	31	36	0.59
Transmembrane Helix	37	56	0.87
Cytoplasmic	57	62	0.65
Transmembrane Helix	63	84	0.92
Non-Cytoplasmic	85	101	0.68
Transmembrane Helix	102	123	0.88
Cytoplasmic	124	145	0.68
Transmembrane Helix	146	163	0.76
Non-Cytoplasmic	164	179	0.62