YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78692433, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.79
Transmembrane Helix	17	37	0.93
Non-Cytoplasmic	38	47	0.74
Transmembrane Helix	48	66	0.89
Cytoplasmic	67	73	0.72
Transmembrane Helix	74	92	0.96
Non-Cytoplasmic	93	111	0.73
Transmembrane Helix	112	128	0.76
Cytoplasmic	129	137	0.70
Transmembrane Helix	138	156	0.82
Non-Cytoplasmic	157	177	0.56
Transmembrane Helix	178	201	0.89
Cytoplasmic	202	221	0.74
Transmembrane Helix	222	241	0.71
Non-Cytoplasmic	242	270	0.83
Transmembrane Helix	271	293	0.83
Cytoplasmic	294	303	0.84
Transmembrane Helix	304	328	0.81
Non-Cytoplasmic	329	336	0.76
Transmembrane Helix	337	359	0.88
Cytoplasmic	360	367	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAHQRQNIW QRLHIDLPLL LGLFAVMGFG LFVIYSASGE DLGMMERQLF RMFLSLGIMF  60
   61 TMAQINPEAL KRWALPIYLA GIVLLLGVHF FGEINKGAQR WLNLGFMEFQ PSELIKLAFP 120
  121 ITMAWYISKF PLPPKKRYLA GAAVILLVPT LLIAKQPDLG TSILVAASGI FVLFLSGMSW 180
  181 AIVGGFIAAV LAFLPILWYF LMHDYQRTRV LTLLDPEQDP LGAGYHIIQS KIAIGSGGLW 240
  241 GKGWLDGTQS QLEFIPERHT DFIFAVIGEE FGLIGSIILL LMYLYIIGRG LVIASRAQTS 300
  301 FARLLAGSIT LTFFVYVFVN IGMVSGILPV VGVPLPLVSY GGTSMLTLMT GFGILMSIHT 360
  361 HRRFVDR