YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78508229, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQRIITAI WLIPLVLGAI FLLPVEYFAW ALVAVFLIAA KEWGRIIDSQ CDVTQWSFTC  60
   61 TVGILLIALN LIVPADTIWL RGQIHPIYLA VIAIGALWWM VSLLLVVTYP KSAKLWQKSP 120
  121 MLKSMFGQLT LVPCFVALIA LKSISSQISP YYGGSLVLLV MLIVWATDSG AYFVGKAIGK 180
  181 TKLMPAVSPA KTLEGLLGGL VTTLIVVAGV MYISPEQELG LVVAVTIFVA LISALGDLSE 240
  241 SMFKRAACIK DSGTILPGHG GVLDRIDSLT AALPVFTLIY IAFWM

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.48
Transmembrane Helix	7	40	0.79
Cytoplasmic	41	55	0.66
Transmembrane Helix	56	75	0.86
Non-Cytoplasmic	76	86	0.74
Transmembrane Helix	87	109	0.92
Cytoplasmic	110	124	0.87
Transmembrane Helix	125	144	0.92
Non-Cytoplasmic	145	151	0.78
Transmembrane Helix	152	175	0.89
Cytoplasmic	176	192	0.91
Transmembrane Helix	193	213	0.93
Non-Cytoplasmic	214	218	0.85
Transmembrane Helix	219	239	0.90
Cytoplasmic	240	262	0.87
Transmembrane Helix	263	284	0.74
Non-Cytoplasmic	285	285	0.80