YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113888019, gi...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAISQTLQ PAQTTSDTRV FDVILVGGGM VGAATAIGLA KQGLQVAVIE SFAPEAYSPE  60
   61 QALDVRVSAI SVASEQLLEQ LGALESLLNM RNVPYLGLET WELDGCITQF HSSQIGASHL 120
  121 GHIVENRLVQ LALWEQMQQW DAIKLFCPER VAKFARIVDG VSVHLQSGIQ LEAKLLIGAD 180
  181 GANSQVRQWA GIGISGWDYA QSAMLINIQT AQGQQDVTWQ QFTPSGPRSL LPLPGNHASL 240
  241 VWYDDANRIK QLMQLNHKQL ADQIRQHFPA RLDSDFTVEA KGSFALTRRH ANAYFKPNVV 300
  301 ILGDAAHTIN PLAGQGVNLG FKDVEALLAV IKAALTEDKP WWSTEVLNAY QAKRYRDNQL 360
  361 MMTTMDVFYA GFSNDILPLK LLRNGALKLA NINSPIKRTV LKYAMGLN

Type	Start	End	Confidence
Cytoplasmic	1	19	0.67
Transmembrane Helix	20	40	0.67
Non-Cytoplasmic	41	408	0.98