YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78508781, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTNIRAFAQ QKSRLSVLRL VLAFILGAST ALSFAPYSLW IIYPVAMALA LWLSGSLAPK  60
   61 ASFFHWLSFG FGCFAVGISW VHVSMDTFGG LPLAASVGLM ALLALYLALY PALTGLGLAW 120
  121 LTRTNTSSTP SLWRNLLLFP ALWVLTEWAR GWVMTGFPWI WAGYSQTQGP LKELASIIGA 180
  181 LGLSFLIAML AGALALCFSK RYKSLLVLLP IITAAAWVAP KLTQIKPTGE SVKVALVQGN 240
  241 IPQSMKWEPE ALWPTLLKYM DLSREHFDAD IIVWPEAAIP APESMVQDFL DNANKVANLN 300
  301 HTSIITGIIS RQQNEFYNSL IVLGNHNQKQ QDTPDYESDG SNQFKKHHLL PIGEFVPFEA 360
  361 LLRPIAPFFN LPMSSFARGD YQQPNLSAVG HKIAPAICYE IAFPEQLRDS VNLGTDLLLT 420
  421 VSNDAWFGTS NGPLQHMEIA QMRAIELGRP LVRATNNGVT AVVDEKGNIT AALPQFETGV 480
  481 LSATIPLVTG QTWFAKIGQT PLLLLCGALL LVGFIRRKK

Type	Start	End	Confidence
Cytoplasmic	1	14	0.97
Transmembrane Helix	15	34	0.92
Non-Cytoplasmic	35	38	0.78
Transmembrane Helix	39	56	0.92
Cytoplasmic	57	62	0.77
Transmembrane Helix	63	83	0.93
Non-Cytoplasmic	84	96	0.72
Transmembrane Helix	97	121	0.82
Cytoplasmic	122	131	0.89
Transmembrane Helix	132	154	0.84
Non-Cytoplasmic	155	173	0.88
Transmembrane Helix	174	197	0.91
Cytoplasmic	198	204	0.77
Transmembrane Helix	205	220	0.88
Non-Cytoplasmic	221	492	0.91
Transmembrane Helix	493	515	0.83
Cytoplasmic	516	519	0.85