YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_SHESM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATGEALTP QGYIQHHLTN LHVGEGFWTW HIDSLFFSVG LGVLFLWIFR SVGKKATSGV  60
   61 PGKLQCFIEM IVEFVDNSVK ESFHGRNALI APLALTIFVW VFMMNFMDML PVDWLPWLAS 120
  121 LAGVPYLKVV PTTDVNITFS LAIGVFVLII YYSIKVKGVS GFVKELTLQP FNHKAMIPVN 180
  181 LLLETVTLIA KPISLALRLF GNLYAGELIF ILIALMYGTN LLLSSLGVTL QLGWLIFHIL 240
  241 VITLQAFIFM MLTIVYLSMA HEDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.98
Transmembrane Helix	27	49	0.89
Cytoplasmic	50	87	0.95
Transmembrane Helix	88	107	0.91
Non-Cytoplasmic	108	134	0.80
Transmembrane Helix	135	154	0.93
Cytoplasmic	155	199	0.78
Transmembrane Helix	200	223	0.80
Non-Cytoplasmic	224	233	0.62
Transmembrane Helix	234	257	0.91
Cytoplasmic	258	264	0.66