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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|78509358, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKRPLIEPQ APLTQWQKSL PFKLSLIQLL IASILIFSTA WVILNIQTQQ ISEQQTLLNQ  60
   61 NHGQIIIAKL QEMTSQVENQ VNAISQIAML YRYEPEQLSK SIPVLLSIEN QKAIISGGGI 120
  121 WPEPGAFDRQ KFRDSLFWSH NIHGELVAIN SYNDDSFPSY HTEEWYRPTR YFPVGKIFWS 180
  181 KSYVDPTTHE PMVTASGAMW MEHQFIGAAT TDISLEKLNQ LLRNTMLDVS GYVIALDHQN 240
  241 QILASPNSDN LPQSAQNPNH ALQTFDELAK TETAFSPIAS ALHLADRSFI EQAVAERVFT 300
  301 QEQMDNLTRL SNNSEREMLS AIVNDNAKNH FLTPRRIASV SLTVDPILKG PSLVSVFLMP 360
  361 HTYWKILVVT PIAPLQDTAK QLIEKVGLSL VLIQMLGLIL LFLLQHRLLI APIMEMVQAL 420
  421 KRNDSASIEL KANERHDEVG LLAKSFLSRT QQLEVAMASL DASNLALEQQ LLTQQHFQQE 480
  481 LNQRKEQLRS LLDFSSTIIY IKDLNGRYTL VNNKYCEVLG IERRKIIGAT DFDLFQNSFA 540
  541 QLYQQNDQRV THSKDAIHFE EPIPSLRGEL IYQMSKFDIR DDEDNSIGVG AIGFNVDLKK 600
  601 RQEKEQEKLL QSQLTQLKEQ QHKTQLAQQE NSQLREQLAV IHDEINQQIQ VNLSKQQSQK 660
  661 LMQNFLAEVM SQMMQEQDKL LAQICQVGHK EDDSQQAQVV QLMSQQAARL RHISQLFTDQ 720
  721 QSEIRPLHLA MFINQLLSLL QPQLLKTQVK VKLECDEQLV VDGNAWQYLQ FFYRLINNTL 780
  781 HHAFKEHNQN RTLALTLEKK DGELQMQLKD NGVGISVAHL EQLKQEMQQN QCIGTLTCIN 840
  841 LWIKEELHGE LKVESELNRG TLIECHWPLA AV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle