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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114046620, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLSLSRSS LTGRLMLAFG VLGVLLLLLV SLGSLSLHWL KQADSYLYEE SLPASQAARQ  60
   61 LVQASNALSD GVTQLGQVED ERQREFIGRK LSLESATMLN SIKVLLTLDV NEDNHLSVLA 120
  121 GQIIEQLTLL GKSVGQRITL GDELQLRARE LSIAAGRASE LLQSELAVVD SAILAKLSQA 180
  181 YPDMAGDKRS GQLLDDVIER ELDVQEQLNR ALKLVHQIAL LSQLFEASEL QSELQLSVPR 240
  241 LLATFASTTP SHPAAQSKPV LGTAIEQASS AVTQPPRGDV GIDLMALTTV SELIRDPGRL 300
  301 KALKAELAIL LHTPKIIKLQ RELSQSLQRQ QRQQQELAEK LYSLNTLVDS ALNQQQQRAE 360
  361 LARSDYLMQL SYARLGLWGT GILMLVIIGV VVYRVIYRGI ALRLNQATEA MSRLSLGDTN 420
  421 VSLDAHGDDE LTAMANAIEA FKRKTAHNLK LQADLRQVAD ELTEHKKALE QTVATRTQEL 480
  481 AEANLRLDAE AKGHAKARII AEEASQAKSQ FLATMSHEIR TPLNGLLGTL TLLGHSQLPP 540
  541 VQQQMLALSQ YSGTLLQTVL SDILDFSRLE QGNLTNEPRP TDINALLDEV LAIMVAGANL 600
  601 AGLSLRLNRP QLPACIQIDG PKLRQVLFNL IGNGIKFTPE GGVSLNVSVR GAKLAFVVAD 660
  661 TGVGIAPEVR EQLFMPYCVL PNQGRSRGTG LGLAICKQLV ELMDAQGPGI WVKSEPGKGS 720
  721 EFGFELSFTR CDKALDTQTQ VQKRVNPQRV LVIEDNKVNA MVAQGFLAHL GHSSSLAISC 780
  781 QQAIAHVSGD KAFDAVMLDI QLSDGSGLTL LPQLKALFAN DNVKFAAFTA QMQTEDLSLY 840
  841 REAGFDTVLA KPLSLQTLAE WLGVARVPAS MPALPYESSS QSAESLQSPN NAEPTSQSHQ 900
  901 AETLLDLNQL QQDLDVLGVK AVSDMLALYR TSSAEQIERL SALSSVAGFS EGAKLLHALK 960
  961 GSSASMGLKA LTECCQQWEK TLNTTGENVL DSKAVTELTA CWQTSMTALE QWLATQD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle